miRBase entry: pny-mir-10555

Stem-loop pny-mir-10555

Accession

MI0035036

Description

Pundamilia nyererei pny-mir-10555 precursor miRNA

Sequence

CCUCAAGCUGCUGUUGCUCGUCUguggcgauccagaaauagcagcagcuugucugga
((.(((((((((((((....((((........))))..)))))))))))))...)).

Structure

-  --U             CUCG    ugg 
 CC   CAAGCUGCUGUUG    UCUg   c
 ||   |||||||||||||    ||||    
 gg   guucgacgacgau    agac   g
a  ucu             --aa    cua

Annotation confidence Not enough data

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Genome context

JH419244.1: 887282-887338 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-10555

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-10555

Accession	MIMAT0043033
Description	Pundamilia nyererei pny-miR-10555 mature miRNA
Sequence	1 - CCUCAAGCUGCUGUUGCUCGUCU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381