Stem-loop lja-MIR11158

Accession

MI0035933

Description

Lotus japonicus lja-MIR11158 precursor miRNA

Sequence

2186 reads, 197.0 reads per million, 9 experiments

gcucucaugcuucgagcuuggugUCUUGUGGACUGGGCGAGaccccagggUCCCUCGCCCAGGAGACUCAaccuuaggcgugggacgca
((((((((((((.(((.((((.(((((.....((((((((((((....))))..))))))))))))))))).))))))))))))).)).

Structure

-  -          c   c    u     GUGGA        --    c 
 gc ucucaugcuu gag uugg gUCUU     CUGGGCGA  Gacc c
 || |||||||||| ||| |||| |||||     ||||||||  ||||  
 cg agggugcgga uuc aACU CAGAG     GACCCGCU  CUgg a
a  c          -   c    -     -----        CC    g 

Annotation confidence Medium

Genome context

Chr0: 27907024-27907112 [+]

Mature lja-miR11158-5p

• Accession: MIMAT0054718
• Description: Lotus japonicus lja-miR11158-5p mature miRNA
• Sequence: 24 - UCUUGUGGACUGGGCGAG - 41
• Evidence: experimental ; unknown

Mature lja-miR11158-3p

• Accession: MIMAT0043955
• Description: Lotus japonicus lja-miR11158-3p mature miRNA
• Sequence: 51 - UCCCUCGCCCAGGAGACUCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256