Stem-loop gmo-mir-144

Accession

MI0035990

Description

Gadus morhua gmo-mir-144 precursor miRNA

Literature search

1 open access papers mention gmo-mir-144
(1 sentences)

Sequence

GGAUAUCAUCAUAUACUGUAAGUucauuauggagacaCUACAGUAUAGAUGAUGUACU
..((((((((.(((((((((.((((........)).)))))))))))))))))))...

Structure

-GG        A         A  -  auu 
   AUAUCAUC UAUACUGUA GU uc   a
   |||||||| ||||||||| || ||    
   UGUAGUAG AUAUGACAU Ca ag   u
UCA        -         -  c  agg 

Annotation confidence Not enough data

Genome context

CAEA01183658.1: 343-400 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-144

Mature gmo-miR-144-5p

• Accession: MIMAT0044027
• Description: Gadus morhua gmo-miR-144-5p mature miRNA
• Sequence: 1 - GGAUAUCAUCAUAUACUGUAAGU - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-144-3p

• Accession: MIMAT0044028
• Description: Gadus morhua gmo-miR-144-3p mature miRNA
• Sequence: 38 - CUACAGUAUAGAUGAUGUACU - 58
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324