Stem-loop gmo-mir-222-2

Accession

MI0035992

Description

Gadus morhua gmo-mir-222-2 precursor miRNA

Literature search

1 open access papers mention gmo-mir-222-2
(1 sentences)

Sequence

UGCUCAGUAGGCAGUGUAGAUccuguuuagcaaucagcAGCUACAUCUGGCUACUGGGUCU
.(((((((((.((((((((...(((((........)))))))))).))).)))))))))..

Structure

-U         G   -     AUc     uag 
  GCUCAGUAG CAG UGUAG   cuguu   c
  ||||||||| ||| |||||   |||||    
  UGGGUCAUC GUC ACAUC   GAcga   a
UC         G   U     ---     cua 

Annotation confidence Low

Genome context

CAEA01202201.1: 317-377 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-222-2

Mature gmo-miR-222-2-5p

• Accession: MIMAT0044030
• Description: Gadus morhua gmo-miR-222-2-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGGCAGUGUAGAU - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-222-3p

• Accession: MIMAT0044031
• Description: Gadus morhua gmo-miR-222-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCU - 61
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324