Stem-loop gmo-mir-139

Accession

MI0036005

Description

Gadus morhua gmo-mir-139 precursor miRNA

Sequence

7079 reads, 126.0 reads per million, 20 experiments

UCUACAGUGCAUGUGUCUCCAGUUuguuagugaugcuacUGGAGACCCGGCUCUGUUGGAAU
(((((((.((.((.(((((((((..((.......)).))))))))).)))).))).))))..

Structure

--    -   U  A  U         Uu  ua 
  UCUA CAG GC UG GUCUCCAGU  gu  g
  |||| ||| || || |||||||||  ||  u
  AGGU GUC CG GC CAGAGGUca  cg  g
UA    U   U  -  C         -u  ua 

Annotation confidence High

Genome context

CAEA01319278.1: 43-104 [-]

Mature gmo-miR-139-5p

• Accession: MIMAT0044055
• Description: Gadus morhua gmo-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGUU - 24
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-139-3p

• Accession: MIMAT0044056
• Description: Gadus morhua gmo-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCGGCUCUGUUGGAAU - 62
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324