Stem-loop gmo-mir-200b

Accession

MI0036044

Description

Gadus morhua gmo-mir-200b precursor miRNA

Sequence

CAUCUUACGAGGCAGCAUUGGAugucauaucccucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      uguca 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     a
  GUAG AAUG UCCGUC UAAUcu     u
UA    U    G      A      cuccc 

Annotation confidence Not enough data

Genome context

HE571528.1: 73084-73143 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gmo-mir-200b

Mature gmo-miR-200b-5p

• Accession: MIMAT0044103
• Description: Gadus morhua gmo-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-200b-3p

• Accession: MIMAT0044104
• Description: Gadus morhua gmo-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324