Stem-loop gmo-mir-200a

Accession

MI0036045

Description

Gadus morhua gmo-mir-200a precursor miRNA

Literature search

2 open access papers mention gmo-mir-200a
(3 sentences)

Sequence

CAUCUUACCUGGCAGUGCUUGAuuguaugacuggucuucUAACACUGUCUGGUAACGAUGU
(((((((((.(((((((...((((........))))......))))))).))))).)))).

Structure

-    -     U       ---CUU    gua 
 CAUC UUACC GGCAGUG      GAuu   u
 |||| ||||| |||||||      ||||    
 GUAG AAUGG CUGUCAC      cugg   g
U    C     U       AAUcuu    uca 

Annotation confidence Not enough data

Genome context

HE571528.1: 73296-73356 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gmo-mir-200a

Mature gmo-miR-200a-5p

• Accession: MIMAT0044105
• Description: Gadus morhua gmo-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCUGGCAGUGCUUGA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-200a-3p

• Accession: MIMAT0044106
• Description: Gadus morhua gmo-miR-200a-3p mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGU - 61
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324