Stem-loop gmo-mir-429

Accession

MI0036046

Description

Gadus morhua gmo-mir-429 precursor miRNA

Literature search

1 open access papers mention gmo-mir-429
(1 sentences)

Sequence

GUCUUACCAGACACGGUUAGAuuuaaugaucugugucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((.((......)).)))))))..)))))))))).))...

Structure

---  C          CG       u  au 
   GU UUACCAGACA  GUUAGAu ua  g
   || ||||||||||  ||||||| ||   
   CG AAUGGUCUGU  UAAUcug gu  a
UGC  U          CA       u  cu 

Annotation confidence Not enough data

Genome context

HE571528.1: 74829-74887 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gmo-mir-429

Mature gmo-miR-429-5p

• Accession: MIMAT0044107
• Description: Gadus morhua gmo-miR-429-5p mature miRNA
• Sequence: 1 - GUCUUACCAGACACGGUUAGA - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-429-3p

• Accession: MIMAT0044108
• Description: Gadus morhua gmo-miR-429-3p mature miRNA
• Sequence: 38 - UAAUACUGUCUGGUAAUGCCGU - 59
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324