Stem-loop gmo-mir-205-1

Accession

MI0036060

Description

Gadus morhua gmo-mir-205-1 precursor miRNA

Literature search

1 open access papers mention gmo-mir-205-1
(2 sentences)

Sequence

183889 reads, 2884.0 reads per million, 17 experiments

UCCUUCAUUCCACCGGAGUCUGUauccaugguaaccaGAUUUCAGUGGUGUGAAGAGUA
..((((((.((((.((((((((((((...))))..)))))))).)))).))))))....

Structure

--UC      U    C        --    c 
    CUUCAU CCAC GGAGUCUG  Uauc  
    |||||| |||| ||||||||  |||| a
    GAAGUG GGUG CUUUAGac  augg  
AUGA      U    A        ca    u 

Annotation confidence High

Genome context

HE570301.1: 446959-447017 [+]

Mature gmo-miR-205-5p

• Accession: MIMAT0044127
• Description: Gadus morhua gmo-miR-205-5p mature miRNA
• Sequence: 1 - UCCUUCAUUCCACCGGAGUCUGU - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-205-3p

• Accession: MIMAT0044128
• Description: Gadus morhua gmo-miR-205-3p mature miRNA
• Sequence: 38 - GAUUUCAGUGGUGUGAAGAGUA - 59
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324