Stem-loop gmo-mir-196a

Accession

MI0036073

Description

Gadus morhua gmo-mir-196a precursor miRNA

Sequence

4884 reads, 118.0 reads per million, 17 experiments

UAGGUAGUUUCAUGUUGUUGGGaucugucuucuuacucUGCAACACGAAACUGUCUUA
.((((((((((.((((((.(((.............))).)))))).))))))))))..

Structure

-U          A      U   aucug 
  AGGUAGUUUC UGUUGU GGG     u
  |||||||||| |||||| |||     c
  UCUGUCAAAG ACAACG cuc     u
AU          C      U   auucu 

Annotation confidence Medium

Genome context

HE568479.1: 1225731-1225788 [+]

Mature gmo-miR-196a-5p

• Accession: MIMAT0044146
• Description: Gadus morhua gmo-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-196a-3p

• Accession: MIMAT0060446
• Description: Gadus morhua gmo-miR-196a-3p mature miRNA
• Sequence: 39 - UGCAACACGAAACUGUCUUA - 58
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324