Stem-loop gmo-mir-16a

Accession

MI0036081

Description

Gadus morhua gmo-mir-16a precursor miRNA

Literature search

2 open access papers mention gmo-mir-16a
(3 sentences)

Sequence

124614 reads, 2197.0 reads per million, 20 experiments

UAGCAGCACGUAAAUAUUGGugugugagacuagaccccaaccCCAAUGUUGGCAGUGCUGCUUca
.((((((((((.((((((((.(.((..(........)..))))))))))).)).))))))))...

Structure

--U        -  A        u u  ga acu 
   AGCAGCAC GU AAUAUUGG g gu  g   a
   |||||||| || |||||||| | ||  |    
   UCGUCGUG CG UUGUAACC c ca  c   g
acU        A  G        - -  ac cca 

Annotation confidence Medium

Genome context

HE568600.1: 342080-342144 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-16a

Mature gmo-miR-16a-5p

• Accession: MIMAT0044156
• Description: Gadus morhua gmo-miR-16a-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGG - 20
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-16a-3p

• Accession: MIMAT0044157
• Description: Gadus morhua gmo-miR-16a-3p mature miRNA
• Sequence: 43 - CCAAUGUUGGCAGUGCUGCUU - 63
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324