Stem-loop gmo-mir-11183

Accession

MI0036090

Description

Gadus morhua gmo-mir-11183 precursor miRNA

Sequence

548 reads, 20.0 reads per million, 19 experiments

ggCCCCAGGUAGAGCGCCUUCACCgcggacgcUGAAGGAGCUCUACCUGGGGCCca
(((((((((((((((.((((((.((....)).)))))).)))))))))))))))..

Structure

--               G      C  c 
  ggCCCCAGGUAGAGC CCUUCA Cg g
  ||||||||||||||| |||||| ||  
  CCGGGGUCCAUCUCG GGAAGU gc g
ac               A      c  a 

Annotation confidence Medium

Genome context

HE567111.1: 1660946-1661001 [-]

Mature gmo-miR-11183-5p

• Accession: MIMAT0044169
• Description: Gadus morhua gmo-miR-11183-5p mature miRNA
• Sequence: 3 - CCCCAGGUAGAGCGCCUUCACC - 24
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-11183-3p

• Accession: MIMAT0044170
• Description: Gadus morhua gmo-miR-11183-3p mature miRNA
• Sequence: 33 - UGAAGGAGCUCUACCUGGGGCC - 54
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324