Stem-loop gmo-mir-338-1

Accession

MI0036097

Description

Gadus morhua gmo-mir-338-1 precursor miRNA

Literature search

1 open access papers mention gmo-mir-338-1
(1 sentences)

Sequence

125344 reads, 2069.0 reads per million, 20 experiments

AACAACAUCCUGGUGCUGAUUGAGUaguugugauauaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......)).))))))))))))).))).))))).

Structure

-     C   -         AUU    a  ug 
 AACAA AUC CUGGUGCUG   GAGU gu  u
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ua  g
G     U   U         ---    a  ua 

Annotation confidence High

Genome context

HE566674.1: 170297-170357 [-]

Mature gmo-miR-338-5p

• Accession: MIMAT0044177
• Description: Gadus morhua gmo-miR-338-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGAUUGAGU - 25
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-338-3p

• Accession: MIMAT0044153
• Description: Gadus morhua gmo-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324