Stem-loop gmo-mir-210

Accession

MI0036102

Description

Gadus morhua gmo-mir-210 precursor miRNA

Literature search

1 open access papers mention gmo-mir-210
(6 sentences)

Sequence

65551 reads, 1949.0 reads per million, 20 experiments

AGCCACUGACUAACGCACAUUGUGccacuugcccauuccaCUGUGCGUGUGACAGCGGCUaa
((((.(((.(..(((((((..(((..............))))))))))..).))).))))..

Structure

--    A   A UA       UU   ccacuu 
  AGCC CUG C  ACGCACA  GUG      g
  |||| ||| |  |||||||  |||       
  UCGG GAC G  UGCGUGU  Cac      c
aa    C   A UG       --   cuuacc 

Annotation confidence High

Genome context

HE567225.1: 313435-313496 [-]

Mature gmo-miR-210-5p

• Accession: MIMAT0044182
• Description: Gadus morhua gmo-miR-210-5p mature miRNA
• Sequence: 1 - AGCCACUGACUAACGCACAUUGUG - 24
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-210-3p

• Accession: MIMAT0044183
• Description: Gadus morhua gmo-miR-210-3p mature miRNA
• Sequence: 41 - CUGUGCGUGUGACAGCGGCU - 60
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324