miRBase entry: gmo-mir-125a-2

Stem-loop gmo-mir-125a-2

Accession

MI0036113

Description

Gadus morhua gmo-mir-125a-2 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGAgguuaaaggucacagguuagguccucgggaaca
..(((((((((..((((((((((.........))))))))))))).))))))....

Structure

--UC      -   CU          ggu 
    CCUGAG ACC  UAACCUGUGA   u
    |||||| |||  ||||||||||   a
    gggcuc ugg  auuggacacu   a
acaa      c   --          gga

Annotation confidence Not enough data

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Genome context

HE566792.1: 123228-123283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-125a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-125a-5p

Accession	MIMAT0044194
Description	Gadus morhua gmo-miR-125a-5p mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUGA - 23
Evidence	experimental SOLiD [1], Illumina [2]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305

PubMed ID: 27128807
Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
PLoS One (2016) 11:e0153324