Stem-loop gmo-mir-125a-2

Accession

MI0036113

Description

Gadus morhua gmo-mir-125a-2 precursor miRNA

Sequence

186507 reads, 3093.0 reads per million, 20 experiments

UCCCUGAGACCCUUAACCUGUGagguuaaaggucaCAGGUUAGGUCCUCGGGAACA
..(((((((((..((((((((((.........))))))))))))).))))))....

Structure

--UC      -   CU          ggu 
    CCUGAG ACC  UAACCUGUGa   u
    |||||| |||  ||||||||||   a
    GGGCUC UGG  AUUGGACacu   a
ACAA      C   --          gga 

Annotation confidence High

Genome context

HE566792.1: 123228-123283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-125a-2

Mature gmo-miR-125a-5p

• Accession: MIMAT0044194
• Description: Gadus morhua gmo-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUG - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-125a-2-3p

• Accession: MIMAT0060454
• Description: Gadus morhua gmo-miR-125a-2-3p mature miRNA
• Sequence: 36 - CAGGUUAGGUCCUCGGGAACA - 56
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324