miRBase entry: gmo-mir-153a-2

Stem-loop gmo-mir-153a-2


Accession
MI0036129
Description
Gadus morhua gmo-mir-153a-2 precursor miRNA


Sequence

ucauuuuugugauguugcagcucguaauaugagcccagUUGCAUAGUCACAAAAGUGAU
(((((((((((((..((((((((((...)))))).....))))..))))))))))))).

Structure
-             gu    -----      a 
 ucauuuuugugau  ugca     gcucgu  
 |||||||||||||  ||||     |||||| a
 AGUGAAAACACUG  ACGU     cgagua  
U             AU    Ugacc      u 


Annotation confidence Not enough data
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Genome context
HE568293.1: 85795-85853 [+]

Database links

Mature gmo-miR-153a-3p

Accession MIMAT0044210
Description Gadus morhua gmo-miR-153a-3p mature miRNA
Sequence 39 - UUGCAUAGUCACAAAAGUGAU - 59
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324