Stem-loop gmo-mir-15a

Accession

MI0036168

Description

Gadus morhua gmo-mir-15a precursor miRNA

Sequence

UAGCAGCACAGAAUGGUUUGUgguuacacugagauacaggccguacugugcugcag
..(((((((((.((((((((((............)))))))))).)))))))))..

Structure

UA         A          guuac 
  GCAGCACAG AUGGUUUGUg     a
  ||||||||| ||||||||||      
  cgucguguc ugccggacau     c
ga         a          agagu 

Annotation confidence Low

Genome context

HE571102.1: 46498-46553 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-15a

Mature gmo-miR-15a-5p

• Accession: MIMAT0044267
• Description: Gadus morhua gmo-miR-15a-5p mature miRNA
• Sequence: 1 - UAGCAGCACAGAAUGGUUUGU - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324