Stem-loop gmo-mir-16b

Accession

MI0036169

Description

Gadus morhua gmo-mir-16b precursor miRNA

Sequence

337646 reads, 7002.0 reads per million, 20 experiments

UAGCAGCACGUAAAUAUUGGAGuuuacacugucgcauaugccuCCAGUAUUGAUCGUGCUGCUGA
((((((((((..((((((((((...........((....))))))))))))...)))))))))).

Structure

-          -UA          uuuacacuguc  a 
 UAGCAGCACG   AAUAUUGGAG           gc u
 ||||||||||   ||||||||||           ||  
 GUCGUCGUGC   UUAUGACCuc           cg a
A          UAG          -----------  u 

Annotation confidence High

Genome context

HE571102.1: 46217-46281 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-16b

Mature gmo-miR-16b-5p

• Accession: MIMAT0044268
• Description: Gadus morhua gmo-miR-16b-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGAG - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-16b-3p

• Accession: MIMAT0060463
• Description: Gadus morhua gmo-miR-16b-3p mature miRNA
• Sequence: 44 - CCAGUAUUGAUCGUGCUGCUGA - 65
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324