Stem-loop gmo-mir-100b

Accession

MI0036175

Description

Gadus morhua gmo-mir-100b precursor miRNA

Sequence

173 reads, 4.0 reads per million, 17 experiments

AACCCGUAGAUCCAAACUUGUguugacauuagacaaCAAGCUUACGUCUACUGGU
.(((.((((((..((.((((((((.......))).))))).))..)))))).)))

Structure

A   C      CC  A     -   ga 
 ACC GUAGAU  AA CUUGU guu  c
 ||| ||||||  || ||||| |||  a
 UGG CAUCUG  UU GAACa cag  u
-   U      CA  C     a   au 

Annotation confidence Medium

Genome context

CAEA01223312.1: 123-177 [-]

Mature gmo-miR-100b-5p

• Accession: MIMAT0044275
• Description: Gadus morhua gmo-miR-100b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCAAACUUGU - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-100b-3p

• Accession: MIMAT0060464
• Description: Gadus morhua gmo-miR-100b-3p mature miRNA
• Sequence: 37 - CAAGCUUACGUCUACUGGU - 55
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324