Stem-loop gmo-mir-192

Accession

MI0036177

Description

Gadus morhua gmo-mir-192 precursor miRNA

Literature search

2 open access papers mention gmo-mir-192
(11 sentences)

Sequence

536953 reads, 5594.0 reads per million, 20 experiments

AUGACCUAUGAAUUGACAGCCAgucguccucaaguugCCUGUCAGUUUUAUAGGCCA
.((.(((((((((((((((.(((.(........)))).))))))).)))))))).))

Structure

A  A        -       C   u guc 
 UG CCUAUGAA UUGACAG CAg c   c
 || |||||||| ||||||| ||| |    
 AC GGAUAUUU GACUGUC guu g   u
-  C        U       C   - aac 

Annotation confidence Medium

Genome context

HE572483.1: 16944-17000 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-192

Mature gmo-miR-192-5p

• Accession: MIMAT0044277
• Description: Gadus morhua gmo-miR-192-5p mature miRNA
• Sequence: 1 - AUGACCUAUGAAUUGACAGCCA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-192-3p

• Accession: MIMAT0060465
• Description: Gadus morhua gmo-miR-192-3p mature miRNA
• Sequence: 38 - CCUGUCAGUUUUAUAGGCCA - 57
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324