Stem-loop gmo-mir-194a

Accession

MI0036178

Description

Gadus morhua gmo-mir-194a precursor miRNA

Sequence

17613 reads, 182.0 reads per million, 20 experiments

UGUAACAGCAACUCCAUGUGGAagcuccuccuuCCAGUGGAAGUGCUGCUA
.....(((((..(((((.((((((......)))))))))))..)))))...

Structure

UGUAA     AC     G      cu 
     CAGCA  UCCAU UGGAag  c
     |||||  ||||| ||||||   
     GUCGU  AGGUG ACCuuc  c
--AUC     GA     -      cu 

Annotation confidence Medium

Genome context

HE572483.1: 16511-16561 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-194a

Mature gmo-miR-194a-5p

• Accession: MIMAT0044278
• Description: Gadus morhua gmo-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-194a-3p

• Accession: MIMAT0060466
• Description: Gadus morhua gmo-miR-194a-3p mature miRNA
• Sequence: 34 - CCAGUGGAAGUGCUGCUA - 51
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324