Stem-loop gmo-mir-17-1

Accession

MI0036194

Description

Gadus morhua gmo-mir-17-1 precursor miRNA

Literature search

2 open access papers mention gmo-mir-17-1
(7 sentences)

Sequence

41672 reads, 965.0 reads per million, 20 experiments

CAAAGUGCUUACAGUGCAGGUAguacuaugcaacgcUACUGCAGUGGAGGCACUUCUAG
..(((((((..((.(((((.((((..........))))))))).))..)))))))....

Structure

--CA       UA  G     G    acua 
    AAGUGCU  CA UGCAG UAgu    u
    |||||||  || ||||| ||||     
    UUCACGG  GU ACGUC AUcg    g
GAUC       AG  G     -    caac 

Annotation confidence High

Genome context

HE566687.1: 993187-993245 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from gmo-mir-17-1

Mature gmo-miR-17-5p

• Accession: MIMAT0044301
• Description: Gadus morhua gmo-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-17-1-3p

• Accession: MIMAT0060468
• Description: Gadus morhua gmo-miR-17-1-3p mature miRNA
• Sequence: 37 - UACUGCAGUGGAGGCACUUCUAG - 59
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324