Stem-loop gmo-mir-18a-1

Accession

MI0036216

Description

Gadus morhua gmo-mir-18a-1 precursor miRNA

Literature search

1 open access papers mention gmo-mir-18a-1
(1 sentences)

Sequence

2961 reads, 83.0 reads per million, 20 experiments

UAAGGUGCAUCUAGUGCAGAUagugaaguagacuagcaccuACUGCCCUAAGUGCUCCUUCU
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))..

Structure

-U    U    C   U    A   -  aagu 
  AAGG GCAU UAG GCAG Uag ug    a
  |||| |||| ||| |||| ||| ||    g
  UUCC CGUG AUC CGUC Auc ac    a
UC    U    A   C    -   c  gauc 

Annotation confidence High

Genome context

HE569758.1: 355007-355068 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from gmo-mir-18a-1

Mature gmo-miR-18a-5p

• Accession: MIMAT0044321
• Description: Gadus morhua gmo-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAU - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-18a-1-3p

• Accession: MIMAT0060472
• Description: Gadus morhua gmo-miR-18a-1-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUCU - 62
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324