Stem-loop gmo-mir-92-1

Accession

MI0036220

Description

Gadus morhua gmo-mir-92-1 precursor miRNA

Sequence

999672 reads, 27410.0 reads per million, 20 experiments

AGGUUGGGAGAGGUGACAAUGCUcuguuugggauggUAUUGCACUUGUCCCGGCCU
(((((((((.(((((.(((((((((.....)))..))))))))))).)))))))))

Structure

         G     A      --   g 
AGGUUGGGA AGGUG CAAUGC  Ucu u
||||||||| ||||| ||||||  ||| u
UCCGGCCCU UUCAC GUUAUg  agg u
         G     -      gu   g 

Annotation confidence High

Genome context

HE569758.1: 355560-355615 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from gmo-mir-92-1

Mature gmo-miR-92-5p

• Accession: MIMAT0044325
• Description: Gadus morhua gmo-miR-92-5p mature miRNA
• Sequence: 1 - AGGUUGGGAGAGGUGACAAUGCU - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-92-3p

• Accession: MIMAT0044339
• Description: Gadus morhua gmo-miR-92-3p mature miRNA
• Sequence: 37 - UAUUGCACUUGUCCCGGCCU - 56
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324