Stem-loop gmo-mir-143

Accession

MI0036229

Description

Gadus morhua gmo-mir-143 precursor miRNA

Sequence

GGUGCAGUGCUGCAUCUCUGGUCagcugguagucUGAGAUGAAGCACUGUAGCU
(.(((((((((.((((((.((.(........).)))))))).))))))))).).

Structure

- G         G      U  U agc 
 G UGCAGUGCU CAUCUC GG C   u
 | ||||||||| |||||| || |    
 C AUGUCACGA GUAGAG Uc g   g
U G         A      -  u aug 

Annotation confidence Not enough data

Genome context

HE568986.1: 3418-3471 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-143

Mature gmo-miR-143-5p

• Accession: MIMAT0044336
• Description: Gadus morhua gmo-miR-143-5p mature miRNA
• Sequence: 1 - GGUGCAGUGCUGCAUCUCUGGUC - 23
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-143-3p

• Accession: MIMAT0044337
• Description: Gadus morhua gmo-miR-143-3p mature miRNA
• Sequence: 35 - UGAGAUGAAGCACUGUAGCU - 54
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324