Stem-loop gmo-mir-11217

Accession

MI0036271

Description

Gadus morhua gmo-mir-11217 precursor miRNA

Sequence

3184 reads, 76.0 reads per million, 20 experiments

CUGCAGGCUGCCCAGGCCAUCCUucgccuguaagAUGGCCUGGUCAGCCUGCU
..((((((((.((((((((((...(....)...)))))))))).)))))))).

Structure

CU        C          CUu g 
  GCAGGCUG CCAGGCCAUC   c c
  |||||||| ||||||||||   |  
  CGUCCGAC GGUCCGGUAg   g c
-U        U          aau u 

Annotation confidence Medium

Genome context

HE570442.1: 43958-44010 [+]

Mature gmo-miR-11217-5p

• Accession: MIMAT0044385
• Description: Gadus morhua gmo-miR-11217-5p mature miRNA
• Sequence: 1 - CUGCAGGCUGCCCAGGCCAUCCU - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-11217-3p

• Accession: MIMAT0060479
• Description: Gadus morhua gmo-miR-11217-3p mature miRNA
• Sequence: 35 - AUGGCCUGGUCAGCCUGCU - 53
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324