Stem-loop gmo-mir-11223

Accession

MI0036277

Description

Gadus morhua gmo-mir-11223 precursor miRNA

Sequence

UAUAGUCUGUAGACGCGUCAGGGuaaugagacacaccccCUGUCCCUCUAUAGUCUGUAGA
(((((.(((((((.(.(.(((((...((.....))..))))).)).))))))).)))))..

Structure

--     U       C C U     uaa  a 
  UAUAG CUGUAGA G G CAGGG   ug g
  ||||| ||||||| | | |||||   || a
  AUGUC GAUAUCU C C GUCcc   ac c
AG     U       C - U     -cc  a 

Annotation confidence Not enough data

Genome context

HE568665.1: 194231-194291 [-]

Mature gmo-miR-11223-5p

• Accession: MIMAT0044392
• Description: Gadus morhua gmo-miR-11223-5p mature miRNA
• Sequence: 1 - UAUAGUCUGUAGACGCGUCAGGG - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-11223-3p

• Accession: MIMAT0044393
• Description: Gadus morhua gmo-miR-11223-3p mature miRNA
• Sequence: 40 - CUGUCCCUCUAUAGUCUGUAGA - 61
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324