Stem-loop gmo-mir-11259

Accession

MI0036319

Description

Gadus morhua gmo-mir-11259 precursor miRNA

Sequence

CCACUAGUUUUUUUGUAACAGAuguuguauugauucucUGCUAUAAUCAACUGUGGGAA
((((.((((...(((((.((((.(((.....)))..)))).)))))..))))))))...

Structure

---    U    UUU     A    -u   g 
   CCAC AGUU   UUGUA CAGA  guu u
   |||| ||||   ||||| ||||  ||| a
   GGUG UCAA   AAUAU GUcu  uag u
AAG    -    -CU     C    cu   u 

Annotation confidence Not enough data

Genome context

HE568639.1: 1000336-1000394 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-11259

Mature gmo-miR-11259-5p

• Accession: MIMAT0044439
• Description: Gadus morhua gmo-miR-11259-5p mature miRNA
• Sequence: 1 - CCACUAGUUUUUUUGUAACAGA - 22
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-11259-3p

• Accession: MIMAT0044440
• Description: Gadus morhua gmo-miR-11259-3p mature miRNA
• Sequence: 39 - UGCUAUAAUCAACUGUGGGAA - 59
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324