Stem-loop fve-MIR156a

Accession

MI0036351

Description

Fragaria vesca fve-MIR156a precursor miRNA

Sequence

70163 reads, 8198.0 reads per million, 18 experiments

ggaugguuuaugaggaauuaugUUGACAGAAGAGAGUGAGCACaaccccgcauugaugaaagagagcuuugucauuuuugggagugUGCUCACUCUUCUUCUGUCAGCAucaucaacaacacuuaaucc
(((((((...((..((...(((((((((((((((((((((((((..((((...((((.((((....))))))))....))))..))))))))))).))))))))))))))..))..))..)))..))))

Structure

    --   uua  ag  auu              -           ac    -cau    g    a 
ggau  ggu   ug  ga   augUUGACAGAAGA GAGUGAGCACa  cccg    ugau aaag g
||||  |||   ||  ||   |||||||||||||| |||||||||||  ||||    |||| ||||  
ccua  uca   ac  cu   uACGACUGUCUUCU CUCACUCGUgu  gggu    acug uuuc a
    au   -ca  aa  -ac              U           ga    uuuu    -    g 

Annotation confidence High

Genome context

LG3: 29884140-29884268 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from fve-MIR156a

Mature fve-miR156a-5p

• Accession: MIMAT0044477
• Description: Fragaria vesca fve-miR156a-5p mature miRNA
• Sequence: 23 - UUGACAGAAGAGAGUGAGCAC - 43
• Evidence: experimental ; Illumina [1]

Mature fve-miR156a-3p

• Accession: MIMAT0060496
• Description: Fragaria vesca fve-miR156a-3p mature miRNA
• Sequence: 87 - UGCUCACUCUUCUUCUGUCAGCA - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610