Stem-loop fve-MIR156h

Accession

MI0036357

Description

Fragaria vesca fve-MIR156h precursor miRNA

Sequence

40654 reads, 3522.0 reads per million, 18 experiments

ggggcUGACAGAAGAGAGUGAGCUCAGAUuacacauuuguaaugaguacuaaguuuaucaucuuccucaugcuacauauuuguguaaugugUGCUCACUUCUCUAUCUGUCAGcugc
(.(((((((((((((((((((((.((.((((((((..(((((((((....(((........))).)))))..))))....)))))))).)).)))))).))))).)))))))))).)

Structure

 g          -     -      U  G        --uu    --     uacu   uuu 
g ggcUGACAGA AGAGA GUGAGC CA AUuacaca    ugua  augag    aag   a
| |||||||||| ||||| |||||| || ||||||||    ||||  |||||    |||    
c ucGACUGUCU UCUCU CACUCG gu uaaugugu    acau  uacuc    uuc   u
 g          A     U      U  g        uuau    cg     ---c   uac 

Annotation confidence Medium

Genome context

LG1: 192274-192390 [+]

Mature fve-miR156h-5p

• Accession: MIMAT0044484
• Description: Fragaria vesca fve-miR156h-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCUCAGAU - 29
• Evidence: experimental ; Illumina [1]

Mature fve-miR156h-3p

• Accession: MIMAT0060501
• Description: Fragaria vesca fve-miR156h-3p mature miRNA
• Sequence: 92 - UGCUCACUUCUCUAUCUGUCAG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610