Stem-loop fve-MIR159b

Accession

MI0036361

Description

Fragaria vesca fve-MIR159b precursor miRNA

Sequence

393740 reads, 29712.0 reads per million, 18 experiments

agagaugagagcuuccuucgguccaaaugcaggaguagagaugguguacacUGCUCCUAAUUCAUGAAUACCucuggguugcgcaggauaaugaaacacuaaugcgcagcuuaaggguuugcaugaccuaggagcagagauuuccuucucauuuccuugAUUGGAUUGAAGGGAGCUCUCauuauu
...(((((((((((((((((((((((.(..(((((..((((.((......(((((((((..(((((...((((.(((((((((((.................))))))))))).))))...)))))..)))))))))......)).))))..)))))..))))))))))))))))))))))))...

Structure

aga                       a gc     ua    u  uguaca         AU     AAU    c           ggauaau 
   gaugagagcuuccuucgguccaa u  aggag  gaga gg      cUGCUCCUA  UCAUG   ACCu uggguugcgca       g
   ||||||||||||||||||||||| |  |||||  |||| ||      |||||||||  |||||   |||| |||||||||||       a
   uuaCUCUCGAGGGAAGUUAGGUU A  uccuu  cucu cc      gacgaggau  aguac   uggg auucgacgcgu       a
uua                       - gu     ua    u  uuuaga         cc     guu    a           aaucaca 

Annotation confidence Low

Genome context

LG7: 2338697-2338882 [-]

Mature fve-miR159b-5p

• Accession: MIMAT0060504
• Description: Fragaria vesca fve-miR159b-5p mature miRNA
• Sequence: 52 - UGCUCCUAAUUCAUGAAUACC - 72
• Evidence: experimental ; unknown

Mature fve-miR159b-3p

• Accession: MIMAT0044489
• Description: Fragaria vesca fve-miR159b-3p mature miRNA
• Sequence: 160 - AUUGGAUUGAAGGGAGCUCUC - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610