Stem-loop fve-MIR164c

Accession

MI0036368

Description

Fragaria vesca fve-MIR164c precursor miRNA

Sequence

168 reads, 18.0 reads per million, 18 experiments

agggugaaugaaccaugcUGGAGAAGCAGGGCACAUGCUagauauaucagcaucaugaauaucgaucugagaauuucgCAUGUGCUCUAGCUCUCCACCuuggacucucucccu
((((.((..(..(((.(.((((((.(((((((((((((.((((...((((.(((.........)))))))..)))).))))))))))).)))))))).).))).)..)).))))

Structure

    u  au aa   u c      A  -           U    aua    c   aug 
aggg ga  g  cca g UGGAGA GC AGGGCACAUGC agau   ucag auc   a
|||| ||  |  ||| | |||||| || ||||||||||| ||||   |||| |||   a
uccc cu  c  ggu C ACCUCU CG UCUCGUGUACg uuua   aguc uag   u
    u  cu -a   u C      -  A           c    -ag    -   cua 

Annotation confidence High

Genome context

LG6: 27395980-27396093 [+]

Mature fve-miR164c-5p

• Accession: MIMAT0044498
• Description: Fragaria vesca fve-miR164c-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACAUGCU - 39
• Evidence: experimental ; Illumina [1]

Mature fve-miR164c-3p

• Accession: MIMAT0060509
• Description: Fragaria vesca fve-miR164c-3p mature miRNA
• Sequence: 79 - CAUGUGCUCUAGCUCUCCACC - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610