Stem-loop fve-MIR166c

Accession

MI0036373

Description

Fragaria vesca fve-MIR166c precursor miRNA

Sequence

2269906 reads, 171194.0 reads per million, 18 experiments

uugcggGGAAUGUUGUCUGGCUCGAGGAcccuuuuccgugaaagaucuauagucauauagaucaaucuuuuguauauauuguuuuagauaaauagaugaucaugacuuuuugguggaguuagugucgUCGGACCAGGCUUCAUUCCCCccaa
.((.((((((((..((((((.((((.(((.((.((((((.((((......((((((...(((((.((((((((.((........)).))))).)))))))))))))))))).))))))..)).))).)))).))))))..)))))))).)).

Structure

u  c        UU      C    G   c  -u      g    aucuau      aua     a   -     a  uau 
 ug ggGGAAUG  GUCUGG UCGA GAc cu  uuccgu aaag      agucau   gauca ucu uuugu ua   u
 || ||||||||  |||||| |||| ||| ||  |||||| ||||      ||||||   ||||| ||| ||||| ||    
 ac CCCCUUAC  CGGACC GGCU cug ga  gaggug uuuu      ucagua   cuagu aga aaaua au   g
a  c        UU      A    g   u  uu      g    ------      ---     -   u     g  uuu 

Annotation confidence High

Genome context

LG7: 1205662-1205813 [-]

Mature fve-miR166c-5p

• Accession: MIMAT0060513
• Description: Fragaria vesca fve-miR166c-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGGA - 28
• Evidence: experimental ; unknown

Mature fve-miR166c-3p

• Accession: MIMAT0044504
• Description: Fragaria vesca fve-miR166c-3p mature miRNA
• Sequence: 128 - UCGGACCAGGCUUCAUUCCCC - 148
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610