miRBase entry: fve-MIR169a

Stem-loop fve-MIR169a

Accession

MI0036380

Description

Fragaria vesca fve-MIR169a precursor miRNA

Sequence

caugaagaaaugagucuaguuugaUAGCCAAGGAUGACUUGCCUgccuccuaaaacagguuuauaugaguuacagauuaaaaccuggucggguucucaggcagucaccuuggcuaacuugacaagcucuuuucucucaug
((((((((((.(((.((.(((.(.(((((((((.(((((.(((((...(((....(((((((...(((........))))))))))...)))....))))))))))))))))))).)..))).))))).))))).)))))

Structure

     -     u   u  a   -u a         A     U     -ccu   aaaa       aua   guu 
cauga agaaa gag cu guu  g UAGCCAAGG UGACU GCCUg    ccu    cagguuu   uga   a
||||| ||||| ||| || |||  | ||||||||| ||||| |||||    |||    |||||||   |||    
guacu ucuuu cuc ga cag  c aucgguucc acuga cggac    ggg    guccaaa   auu   c
     c     u   -  a   uu a         -     -     ucuu   -cug       ---   aga

Annotation confidence Not enough data

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Genome context

LG3: 8877628-8877767 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fve-MIR169a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature fve-miR169a

Accession	MIMAT0044512
Description	Fragaria vesca fve-miR169a mature miRNA
Sequence	25 - UAGCCAAGGAUGACUUGCCU - 44
Evidence	experimental Illumina [1]

References

PubMed ID: 26143249
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
"Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
"Plant Physiol (2015) 169:594-610