miRBase entry: fve-MIR169b

Stem-loop fve-MIR169b

Accession

MI0036381

Description

Fragaria vesca fve-MIR169b precursor miRNA

Sequence

caugaaaaaaggagucuaguuuggUAGCCAAGGAUGACUUGCCUgcuuccuaaaagagguucagucaauuaucaaaaccuaguuggguucucaggcagucaccuuggcuaacuugacaagcucuuuucucucaug
(((((..(((((((.((.(((.(((((((((((.(((((.(((((...(((((...(((((..(........)..)))))..)))))....)))))))))))))))))).))).))).)))))))))...)))))

Structure

     -aa       u  a   u   -        A     U     -cuu     aag     ca uca 
cauga   aaaggag cu guu ggU AGCCAAGG UGACU GCCUg    ccuaa   agguu  g   a
|||||   ||||||| || ||| ||| |||||||| ||||| |||||    |||||   |||||  |    
guacu   uuuucuc ga cag uca ucgguucc acuga cggac    ggguu   uccaa  c   u
     cuc       -  a   u   a        -     -     ucuu     -ga     aa uau

Annotation confidence Not enough data

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Genome context

LG3: 8882608-8882742 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fve-MIR169b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature fve-miR169b

Accession	MIMAT0044513
Description	Fragaria vesca fve-miR169b mature miRNA
Sequence	25 - UAGCCAAGGAUGACUUGCCU - 44
Evidence	experimental Illumina [1]

References

PubMed ID: 26143249
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
"Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
"Plant Physiol (2015) 169:594-610