Stem-loop fve-MIR171d

Accession

MI0036387

Description

Fragaria vesca fve-MIR171d precursor miRNA

Sequence

20027 reads, 1904.0 reads per million, 18 experiments

gaaauaguuacugcgaUGUUGGCCCGGUUCACUCAGGAGAaagaaacauauagcucaucaaugaaggcuuacuguguuuuucUGAUUGAGCCGUGCCAAUAUCucagugcucuuuc
((((.(((.((((.(((((((((.(((((((.((((((((.....(((((.((((..........))))...))))))))))))).))))))).))))))))).))))))).))))

Structure

    u   u    c         C       C        aagaa     --u    cauc 
gaaa agu acug gaUGUUGGC CGGUUCA UCAGGAGA     acaua   agcu    a
|||| ||| |||| ||||||||| ||||||| ||||||||     |||||   ||||     
cuuu ucg ugac CUAUAACCG GCCGAGU AGUcuuuu     ugugu   ucgg    a
    c   -    u         U       U        -----     cau    aagu 

Annotation confidence High

Genome context

LG2: 19238745-19238860 [-]

Mature fve-miR171d-5p

• Accession: MIMAT0060524
• Description: Fragaria vesca fve-miR171d-5p mature miRNA
• Sequence: 17 - UGUUGGCCCGGUUCACUCAGGAGA - 40
• Evidence: experimental ; unknown

Mature fve-miR171d-3p

• Accession: MIMAT0044519
• Description: Fragaria vesca fve-miR171d-3p mature miRNA
• Sequence: 83 - UGAUUGAGCCGUGCCAAUAUC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610