Stem-loop fve-MIR2109

Accession

MI0036397

Description

Fragaria vesca fve-MIR2109 precursor miRNA

Sequence

180231 reads, 16498.0 reads per million, 18 experiments

ggcggcgugaaggcucUGCGAGUGUCUUCACCUCUGAAgccucuuucugaagaagcuccucuucuuguuuggcuucAGGGCGAAUACACUCUCAGAcacuacacgcucgcc
(((((((((.((..((((.((((((.(((.((.((((((((.......(((((......)))))......)))))))))).))).)))))).))))..)).))))).))))

Structure

    -     a  gc    C      C   A  U        ucuuucu     ag 
ggcg gcgug ag  ucUG GAGUGU UUC CC CUGAAgcc       gaaga  c
|||| ||||| ||  |||| |||||| ||| || ||||||||       |||||   
ccgc cgcac uc  AGAC CUCACA AAG GG GAcuucgg       cuucu  u
    u     a  ac    U      U   C  -        -uuuguu     cc 

Annotation confidence High

Genome context

LG0: 1732169-1732279 [+]

Mature fve-miR2109-5p

• Accession: MIMAT0044531
• Description: Fragaria vesca fve-miR2109-5p mature miRNA
• Sequence: 17 - UGCGAGUGUCUUCACCUCUGAA - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR2109-3p

• Accession: MIMAT0060531
• Description: Fragaria vesca fve-miR2109-3p mature miRNA
• Sequence: 77 - AGGGCGAAUACACUCUCAGA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610