Stem-loop fve-MIR390a

Accession

MI0036404

Description

Fragaria vesca fve-MIR390a precursor miRNA

Sequence

3340 reads, 341.0 reads per million, 18 experiments

gaguaugguagaaucuguaAAGCUCAGGAGGGAUAGCGCCaugaagaacaaaaagucuaaauuuguuauucauuggCGCUAUCUAUCCUGGGUUUCAuggcuucuucuuacuaucuc
(((.(((((((((.((((.((((((((((.(((((((((((((((.((((((.........)))))).)))).))))))))))).)))))))))).)))).))))....))))))))

Structure

   u     ----    u    a          G           -    g      aag 
gag auggu    agaa cugu AAGCUCAGGA GGAUAGCGCCa ugaa aacaaa   u
||| |||||    |||| |||| |||||||||| ||||||||||| |||| ||||||   c
cuc uauca    ucuu gguA UUUGGGUCCU UCUAUCGCggu acuu uuguuu   u
   -     uucu    c    C          A           u    a      aaa 

Annotation confidence High

Genome context

LG3: 20594756-20594872 [-]

Mature fve-miR390a-5p

• Accession: MIMAT0044539
• Description: Fragaria vesca fve-miR390a-5p mature miRNA
• Sequence: 20 - AAGCUCAGGAGGGAUAGCGCC - 40
• Evidence: experimental ; Illumina [1]

Mature fve-miR390a-3p

• Accession: MIMAT0060536
• Description: Fragaria vesca fve-miR390a-3p mature miRNA
• Sequence: 77 - CGCUAUCUAUCCUGGGUUUCA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610