Stem-loop fve-MIR393a

Accession

MI0036407

Description

Fragaria vesca fve-MIR393a precursor miRNA

Sequence

9091 reads, 765.0 reads per million, 18 experiments

aaguacuagaggaggcaUCCAAAGGGAUCGCAUUGAUCcuaagcuaacaaagccuuccugaucguaucgaucccuugauagcUUCAGAUCAUGCUAUCCCUUUggauuucuccuuuggaagcuu
((((.((((((((((.((((((((((((.((((.((((..((((((.(((.(.......(((((...)))))).))).))))))..)))))))).)))))))))))).))))))))))..))))

Structure

    -a          c            C    U    cu      a   a ccuuccu     u 
aagu  cuagaggagg aUCCAAAGGGAU GCAU GAUC  aagcua caa g       gaucg  
||||  |||||||||| |||||||||||| |||| ||||  |||||| ||| |       ||||| a
uucg  gguuuccucu uaggUUUCCCUA CGUA CUAG  UUcgau guu c       cuagc  
    aa          u            U    -    AC      a   c -------     u 

Annotation confidence Medium

Genome context

LG7: 16959667-16959790 [+]

Mature fve-miR393a-5p

• Accession: MIMAT0044542
• Description: Fragaria vesca fve-miR393a-5p mature miRNA
• Sequence: 18 - UCCAAAGGGAUCGCAUUGAUC - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR393a-3p

• Accession: MIMAT0060539
• Description: Fragaria vesca fve-miR393a-3p mature miRNA
• Sequence: 83 - UUCAGAUCAUGCUAUCCCUUU - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610