Stem-loop fve-MIR394

Accession

MI0036408

Description

Fragaria vesca fve-MIR394 precursor miRNA

Sequence

12442 reads, 1216.0 reads per million, 18 experiments

cauacagaguuuaUUGGCAUUCUGUCCACCUCCuaucgaucucgaucgagauuucuuuguuuauauggagauauguggaggUGGGCAUACUGCCAACUGAGCUcuguugg
((.((((((((((((((((...(((((((((((.....(((((.((..((((......))))..)).)))))....)))))))))))...)))))).)))))))))))).

Structure

-  u          -      UUC           uaucg     g  cg    uu 
 ca acagaguuua UUGGCA   UGUCCACCUCC     aucuc au  agau  c
 || |||||||||| ||||||   |||||||||||     ||||| ||  ||||   
 gu ugucUCGAGU AACCGU   ACGGGUggagg     uagag ua  uuug  u
g  -          C      CAU           -ugua     g  ua    uu 

Annotation confidence Medium

Genome context

LG2: 19278017-19278126 [+]

Mature fve-miR394-5p

• Accession: MIMAT0044543
• Description: Fragaria vesca fve-miR394-5p mature miRNA
• Sequence: 14 - UUGGCAUUCUGUCCACCUCC - 33
• Evidence: experimental ; Illumina [1]

Mature fve-miR394-3p

• Accession: MIMAT0060540
• Description: Fragaria vesca fve-miR394-3p mature miRNA
• Sequence: 82 - UGGGCAUACUGCCAACUGAGCU - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610