Stem-loop fve-MIR396b

Accession

MI0036409

Description

Fragaria vesca fve-MIR396b precursor miRNA

Sequence

aaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUcaauucucugcuaacaaucuguaaucucuugcaagaguauuagcacaauguuugggaGCUCAAGAAAGCUGUGGGACAacaugacaacccaggauuu
((((((((((((((...(((((((((((((((((.(((((((....((((((...(((((((....)))).)))...))))))....)))..)))).)))))))))))))))))...)))))....)))))))))

Structure

         ----     cuu                 A    --   ucuc      caa   -    u 
aaguccugg    ucaug   UUCCACAGCUUUCUUGA CUUc  aau    ugcuaa   ucu guaa c
|||||||||    |||||   ||||||||||||||||| ||||  |||    ||||||   ||| ||||  
uuuaggacc    aguac   AGGGUGUCGAAAGAACU Gagg  uug    acgauu   aga cguu u
         caac     aAC                 C    gu   uaac      aug   a    c 

Annotation confidence Not enough data

Genome context

LG1: 2526777-2526911 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fve-MIR396b

Mature fve-miR396b-5p

• Accession: MIMAT0044544
• Description: Fragaria vesca fve-miR396b-5p mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUU - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR396b-3p

• Accession: MIMAT0044545
• Description: Fragaria vesca fve-miR396b-3p mature miRNA
• Sequence: 96 - GCUCAAGAAAGCUGUGGGACA - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610