Stem-loop fve-MIR396c

Accession

MI0036411

Description

Fragaria vesca fve-MIR396c precursor miRNA

Sequence

ugauccucuuuguauucUUCCACAGCUUUCUUGAACUGcauccagcauaagagaucugaucuuugcauuugaggcagagguugcucuauauuuggcaugugGUUCAAUAAAGCUGUGGGAAGauacagacagguuca
(((.(((.((((((((.((((((((((((.(((((((((((((((.(((((((...((((((((((.......)))))))))))))).))))))).))))))))))).)))))))))))).)))))))).))).)))

Structure

   u   c        c            C           -    c   -    auc          au 
uga ccu uuuguauu UUCCACAGCUUU UUGAACUGcau ccag aua agag   ugaucuuugc  u
||| ||| |||||||| |||||||||||| ||||||||||| |||| ||| ||||   ||||||||||  u
acu gga agacauaG AGGGUGUCGAAA AACUUGgugua gguu uau ucuc   guuggagacg  g
   u   c        A            U           c    -   a    ---          ga 

Annotation confidence Not enough data

Genome context

LG1: 2522051-2522187 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fve-MIR396c

Mature fve-miR396c-5p

• Accession: MIMAT0044548
• Description: Fragaria vesca fve-miR396c-5p mature miRNA
• Sequence: 18 - UUCCACAGCUUUCUUGAACUG - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR396c-3p

• Accession: MIMAT0044549
• Description: Fragaria vesca fve-miR396c-3p mature miRNA
• Sequence: 102 - GUUCAAUAAAGCUGUGGGAAG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610