Stem-loop fve-MIR397

Accession

MI0036414

Description

Fragaria vesca fve-MIR397 precursor miRNA

Sequence

2792 reads, 243.0 reads per million, 18 experiments

uucagaaugaagaaacgUCAUUGAGUGCAGCGUUGAUGaaguccuuaguuucguuuccgaguuccgaugaucuucauggaggcgagcuggaggcaauuuCAUCAACGCUGCACCCAAUUAuguuucuauuccuucugga
(((((((.((((((((((.((((.((((((((((((((((((((((((((.((((((((((.((....)).)))...))))))))))).))))..)))))))))))))))))).)))).))))))))..)).)))))))

Structure

       u  --        C    A                  --    -    u       ---   u  c 
uucagaa ga  agaaacgU AUUG GUGCAGCGUUGAUGaagu  ccuu aguu cguuucc   gag uc g
||||||| ||  |||||||| |||| ||||||||||||||||||  |||| |||| |||||||   ||| ||  
aggucuu cu  ucuuuguA UAAC CACGUCGCAACUACuuua  ggag ucga gcggagg   uuc ag a
       c  ua        U    C                  ac    g    -       uac   u  u 

Annotation confidence High

Genome context

LG3: 2934926-2935064 [-]

Mature fve-miR397-5p

• Accession: MIMAT0044552
• Description: Fragaria vesca fve-miR397-5p mature miRNA
• Sequence: 18 - UCAUUGAGUGCAGCGUUGAUG - 38
• Evidence: experimental ; Illumina [1]

Mature fve-miR397-3p

• Accession: MIMAT0060543
• Description: Fragaria vesca fve-miR397-3p mature miRNA
• Sequence: 100 - CAUCAACGCUGCACCCAAUUA - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610