Stem-loop fve-MIR399a

Accession

MI0036415

Description

Fragaria vesca fve-MIR399a precursor miRNA

Sequence

3964 reads, 315.0 reads per million, 18 experiments

agcgaauuaguuguAGGGCGUCUUUCCUUUGGCAGGcaauggugguuuuguuucgauggauuucacguuguaauugguuguugauuaugaucUGCCAAAGGAGAGUUGCCCUGcaacugcuuuugcu
((((((.(((((((((((((.(((((((((((((((..(((((.(....(((.(((((.......))))).))).......).)))))..))))))))))))))).)))))))))))))..))))))

Structure

      -u             U               ca     g ---uuuu   u     ga 
agcgaa  uaguuguAGGGCG CUUUCCUUUGGCAGG  auggu g       guu cgaug  u
||||||  ||||||||||||| |||||||||||||||  ||||| |       ||| |||||  u
ucguuu  gucaacGUCCCGU GAGAGGAAACCGUcu  uauua u       uaa guugc  u
      uc             U               ag     g uguuggu   u     ac 

Annotation confidence High

Genome context

LG5: 958264-958390 [-]

Mature fve-miR399a-5p

• Accession: MIMAT0060544
• Description: Fragaria vesca fve-miR399a-5p mature miRNA
• Sequence: 15 - AGGGCGUCUUUCCUUUGGCAGG - 36
• Evidence: experimental ; unknown

Mature fve-miR399a-3p

• Accession: MIMAT0044553
• Description: Fragaria vesca fve-miR399a-3p mature miRNA
• Sequence: 93 - UGCCAAAGGAGAGUUGCCCUG - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610