Stem-loop fve-MIR408

Accession

MI0036417

Description

Fragaria vesca fve-MIR408 precursor miRNA

Sequence

777152 reads, 51237.0 reads per million, 18 experiments

aagaCAGGGACGAGGUAGAGCAUGGAuggaguucccaacagaacagucaagcuguuguggcuccacucaUGCACUGCCUCUUCCCUGGCUu
(((.((((((.(((((((.((((((.((((((......((.((((((...)))))).)))))))).)))))).))))))).)))))).)))

Structure

   a      C       A      A      ucccaa  g      c 
aag CAGGGA GAGGUAG GCAUGG uggagu      ca aacagu  
||| |||||| ||||||| |||||| ||||||      || |||||| a
uUC GUCCCU CUCCGUC CGUacu accucg      gu uugucg  
   G      U       A      c      ------  g      a 

Annotation confidence High

Genome context

LG1: 12223023-12223113 [-]

Mature fve-miR408-5p

• Accession: MIMAT0060546
• Description: Fragaria vesca fve-miR408-5p mature miRNA
• Sequence: 5 - CAGGGACGAGGUAGAGCAUGGA - 26
• Evidence: experimental ; unknown

Mature fve-miR408-3p

• Accession: MIMAT0044555
• Description: Fragaria vesca fve-miR408-3p mature miRNA
• Sequence: 70 - UGCACUGCCUCUUCCCUGGCU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610