Stem-loop fve-MIR5225

Accession

MI0036423

Description

Fragaria vesca fve-MIR5225 precursor miRNA

Sequence

gaucgacgcguagggacuuCUGUCGUAGGAGAGAUGGCGCCaaauguaugaugauuacugauuguauaugauguuuauagcuacuguauauucaugcggugggcgucaucucucuucgacugaagccccucggaucgauu
((((((..((.((((.((((.((((.(((((((((((((((...(((((((....(((......((((.......))))......)))...)))))))...))))))))))))))))))).)))).))))))..))))))

Structure

      cg  u    a    U    U               aaa       ugau   ugauug    ug 
gaucga  cg aggg cuuC GUCG AGGAGAGAUGGCGCC   uguauga    uac      uaua  a
||||||  || |||| |||| |||| |||||||||||||||   |||||||    |||      ||||  u
uuagcu  gc uccc gaag cagc uucucucuacugcgg   gcguacu    aug      auau  g
      ag  -    c    u    -               gug       -uau   ucaucg    uu 

Annotation confidence Not enough data

Genome context

LG6: 1800796-1800935 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fve-MIR5225

Mature fve-miR5225

• Accession: MIMAT0044561
• Description: Fragaria vesca fve-miR5225 mature miRNA
• Sequence: 20 - CUGUCGUAGGAGAGAUGGCGCC - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610