Stem-loop fve-MIR530

Accession

MI0036424

Description

Fragaria vesca fve-MIR530 precursor miRNA

Sequence

8870 reads, 986.0 reads per million, 18 experiments

agccaaaggugguuucauuuaucUGCAUUUGCACCUGCACCUCUucgauccuagauuaaugguuucugccaaguacuacuggaaugcagaagaucaauAGGUGCAGGUGUAAGUGCAGAcgaaugccuucuugguu
.(((((.((.((...(((((.(((((((((((((((((((((.((.(((((((......))).((((((..(((...))).....)))))))))))).))))))))))))))))))))).))))))).))))))).

Structure

a     a  u  uuu     a                     C  c    cuagauuaauggu      ---ca   a 
 gccaa gg gg   cauuu ucUGCAUUUGCACCUGCACCU Uu gauc             uucugc     agu  
 ||||| || ||   ||||| ||||||||||||||||||||| || ||||             ||||||     ||| c
 ugguu cu cc   guaag AGACGUGAAUGUGGACGUGGA aa cuag             aagacg     uca  
u     -  u  ---     c                     u  -    -------------      uaagg   u 

Annotation confidence High

Genome context

LG6: 9182132-9182267 [+]

Mature fve-miR530-5p

• Accession: MIMAT0044562
• Description: Fragaria vesca fve-miR530-5p mature miRNA
• Sequence: 24 - UGCAUUUGCACCUGCACCUCU - 44
• Evidence: experimental ; Illumina [1]

Mature fve-miR530-3p

• Accession: MIMAT0060553
• Description: Fragaria vesca fve-miR530-3p mature miRNA
• Sequence: 99 - AGGUGCAGGUGUAAGUGCAGA - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610