Stem-loop fve-MIR535a

Accession

MI0036425

Description

Fragaria vesca fve-MIR535a precursor miRNA

Sequence

36672 reads, 3587.0 reads per million, 18 experiments

ggggugagcuaugauuggacuuguuUGACGAUGAGAGAGAGCACGCuuguuagcauccaugaaacagucaugcgugUUUACAGGCGUGCUCCCUCUCAucgucauacaaucgaucuaaucuugugcaccuu
.(((((.((...((((((((((((.((((((((((((.((((((((((((.(((((.(((((.....))))).))))).)))))))))))).)))))))))))).))))..).)))))))..)).))))).

Structure

g     a  uau       - --    u            A            u     c     a 
 gggug gc   gauugga c  uugu UGACGAUGAGAG GAGCACGCuugu agcau cauga a
 ||||| ||   ||||||| |  |||| |||||||||||| |||||||||||| ||||| ||||| c
 uccac ug   cuaaucu g  aaca acugcuACUCUC CUCGUGCGGACA UUgug guacu a
u     g  -uu       a cu    u            C            U     c     g 

Annotation confidence Medium

Genome context

LG2: 10572490-10572620 [+]

Mature fve-miR535a-5p

• Accession: MIMAT0044563
• Description: Fragaria vesca fve-miR535a-5p mature miRNA
• Sequence: 26 - UGACGAUGAGAGAGAGCACGC - 46
• Evidence: experimental ; Illumina [1]

Mature fve-miR535a-3p

• Accession: MIMAT0060554
• Description: Fragaria vesca fve-miR535a-3p mature miRNA
• Sequence: 77 - UUUACAGGCGUGCUCCCUCUCA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610