Stem-loop fve-MIR535b

Accession

MI0036426

Description

Fragaria vesca fve-MIR535b precursor miRNA

Sequence

26337 reads, 2353.0 reads per million, 18 experiments

uguuUGACGAUGAGAGAGAGCACGCuugucagcaucuaugaaacagucaugcguguuuacgugcGUGCUCCCUCUUCUCAUCAUAca
(((.(((.((.(((((.((((((((.(((.(((((.(((((.....))))).))))).))).)))))))).))))).)).))).)))

Structure

   u   C  U     A        u   c     c     a 
ugu UGA GA GAGAG GAGCACGC ugu agcau uauga a
||| ||| || ||||| |||||||| ||| ||||| ||||| c
acA ACU CU UUCUC CUCGUGcg gca uugug guacu a
   U   A  C     C        u   u     c     g 

Annotation confidence High

Genome context

LG2: 10602901-10602987 [+]

Mature fve-miR535b-5p

• Accession: MIMAT0044564
• Description: Fragaria vesca fve-miR535b-5p mature miRNA
• Sequence: 5 - UGACGAUGAGAGAGAGCACGC - 25
• Evidence: experimental ; Illumina [1]

Mature fve-miR535b-3p

• Accession: MIMAT0060555
• Description: Fragaria vesca fve-miR535b-3p mature miRNA
• Sequence: 65 - GUGCUCCCUCUUCUCAUCAUA - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610