Stem-loop fve-MIR11288c

Accession

MI0036431

Description

Fragaria vesca fve-MIR11288c precursor miRNA

Sequence

agaucuagcgucuucgaucagcgaUUCGUUCGGAUUCCAAUUCAAAcugaucgagcagucguuUGAAUUGGGAUUUGUCGAAUUgagggccgagaugaauagaucu
(((((((.(((((.((.((..(((((((..(((((((((((((((((.(((......)))))))))))))))))))).)))))))..)).)))))))..)))))))

Structure

       -g     u  a  ag       UU                 u   cg 
agaucua  cgucu cg uc  cgaUUCG  CGGAUUCCAAUUCAAAc gau  a
|||||||  ||||| || ||  |||||||  ||||||||||||||||| |||   
ucuagau  guaga gc gg  gUUAAGC  GUUUAGGGUUAAGUuug cug  g
       aa     -  c  ga       -U                 -   ac 

Annotation confidence Not enough data

Genome context

LG3: 25353781-25353886 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fve-MIR11288c

Mature fve-miR11288c-5p

• Accession: MIMAT0044569
• Description: Fragaria vesca fve-miR11288c-5p mature miRNA
• Sequence: 25 - UUCGUUCGGAUUCCAAUUCAAA - 46
• Evidence: experimental ; Illumina [1]

Mature fve-miR11288c-3p

• Accession: MIMAT0044570
• Description: Fragaria vesca fve-miR11288c-3p mature miRNA
• Sequence: 64 - UGAAUUGGGAUUUGUCGAAUU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26143249
   Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry
   "Xia R, Ye S, Liu Z, Meyers BC, Liu Z"
   "Plant Physiol (2015) 169:594-610